PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 237aa    MW: 26847.8 Da    PI: 7.0316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-52944PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2091140255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +++G+r+++ +g+W+AeIrdp     +  r +lg+f taeeAa+a+++a+k+++g
  Han006544  91 KFRGIRQRP-WGKWAAEIRDPH----KgVRLWLGTFNTAEEAARAYDEAAKRIRG 140
                89*******.**********72....35************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-3291148IPR001471AP2/ERF domain
CDDcd000189.35E-3491147No hitNo description
SMARTSM003804.7E-3791154IPR001471AP2/ERF domain
PfamPF008475.4E-1491140IPR001471AP2/ERF domain
PROSITE profilePS5103223.23591148IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2291148IPR016177DNA-binding domain
PRINTSPR003673.1E-1192103IPR001471AP2/ERF domain
PRINTSPR003673.1E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
XLNILSVRPK MCGEAVISDA DPXLLARPEA KANDLWSEFD TFDCLGWDFK PQTHPSFTGA  60
ATSISKVVTN KEPQYKTPKP SEKKAKPRKN KFRGIRQRPW GKWAAEIRDP HKGVRLWLGT  120
FNTAEEAARA YDEAAKRIRG DKAKLNFHSP VTKKPCVETP TESSVNNSVL STPALVSYDQ  180
LQNQCYYYNN VADDYEFKEQ ISNLETFLGL DHESTQLGEI GVESSHLWMM DDFPVII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2292147359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455978.11e-57PREDICTED: ethylene-responsive transcription factor RAP2-3
TrEMBLA0A118JWY71e-100A0A118JWY7_CYNCS; AP2/ERF domain-containing protein
STRINGVIT_05s0077g01860.t014e-54(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-42ethylene-responsive element binding protein